PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000592543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 485aa    MW: 54522.2 Da    PI: 7.0006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000592543genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W ++Ed++l ++++  G g W+  +r+ g++R++k+c++rw++yl
    MDP0000592543 14 RGAWLAWEDKILTNYIETNGEGKWRDLPRRAGLNRCGKSCRLRWLNYL 61
                     89********************************************97 PP

2Myb_DNA-binding52.21.4e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
    MDP0000592543  67 RGNISXEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      78999*****************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.018961IPR017930Myb domain
SuperFamilySSF466891.07E-2512108IPR009057Homeodomain-like
SMARTSM007172.0E-101363IPR001005SANT/Myb domain
PfamPF002492.6E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-191568IPR009057Homeodomain-like
CDDcd001671.66E-71661No hitNo description
PROSITE profilePS5129425.87362116IPR017930Myb domain
SMARTSM007173.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2469115IPR009057Homeodomain-like
CDDcd001676.23E-977112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGRKPCSDKE GLNRGAWLAW EDKILTNYIE TNGEGKWRDL PRRAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI SXEEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKKTEQGS  120
DKAPHHELTS TTNSKEYTPK PKPASKSHQT VQVIRTKAFK CRKVVIPSHL DGHDQMIDRL  180
NVNPGLFPXE SPSSSASQDP QEDSPPCGFL IDFDIDDLFI SDLLNTDNFL QDQINKCDQE  240
MENGITKLEG LMGEAMLENW TASVHDXHDD QIFQPNDDHD RVHGLNATSS XLNLEDDHEK  300
WSSRDENIHL KITPLGDVGC HNPPPLGARH PRRHTSCQGL ALIPFVTSRP GADHFPGPLH  360
HRSTIMSVLG LPFPHGFVFG NSRATSQDGT SQWVTHPRSA LASFSLNFGV PTEPEASELX  420
KGLVLSRXRN IHLRITPLXX DNENPMDVHR IQVNYNIVRN VKSLQASCSS CQAATAPSEF  480
QYIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231211625128MYB TRANSFORMING PROTEIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.272260.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1268590.0KJ126859.1 Malus hybrid cultivar MYB6 (MYB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361684.10.0PREDICTED: transcription repressor MYB5-like
STRINGVIT_11s0016g01320.t015e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1893346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-55MYB family protein